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Category Archives: Bioinformatics
Fast and Effective Genome Sequence Compression, with a multi-purpose method called HMG (2025)
Genomic data is growing at an unprecedented rate, but storing and transmitting it efficiently remains a challenge. Several solutions have been proposed in the literature for compressing genome sequences in recent years such as JARVIS3, GeCo3, and NUHT. However, several … Continue reading
CFP: PM4B 2005: A new workshop on pattern mining and machine learning in bioinformatics @ PAKDD 2025
Today, I would like to announce that we are creating a new workshop for PAKDD 2025 called the 1st Workshop on Pattern mining and Machine learning for Bioinformatics (PM4B 2025). The goal of the workshop is to establish a collaborative platform … Continue reading
Posted in artificial intelligence, Big data, Bioinformatics, Conference, Data Mining, Data science
Tagged big data, bioinformatics, cfp, machine learning, pakdd, pattern mining, pm4b, workshop
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Introducing PSAC-PDB: A Novel Approach to Protein Structure Analysis and Classification
In this blog post, I will give a short overview of our recent research paper about protein structure analysis and classification by my team (M. S. Nawaz, P. Fournier-Viger, Y. He and Q. Zhang). Proteins are essential molecules for life, … Continue reading
Posted in Bioinformatics
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Brief report about the BIBM 2022 conference
This week, I have attended the BIBM 2022 (IEEE International Conference on Bioinformatics and Biomedicine) conference online. I will give a brief report about this conference, although I did not have time to attend many sessions. BIBM 2022 was held … Continue reading
Posted in Bioinformatics, Conference
Tagged bibm, bibm2022, bioinformatics, biomedicine, conference, ieee
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Analyzing the COVID-19 genome with AI and data mining techniques (paper + data + code)
Recently, my team has been working on analyzing COVID-19 genome sequences using pattern mining and other data mining and AI techniques. We have recently published a paper in the Applied Intelligence journal about this. In this blog post, I will … Continue reading